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Defines parameters for the stock-splitting analysis in Reca, including parameters for misclassifying when determining stock membership of a specimen.

Usage

DefineStockSplittingParameters(
  processData,
  DefinitionMethod = c("ResourceFile", "FunctionParameters"),
  FileName = character(),
  StockNameCC = character(),
  StockNameS = character(),
  ProbabilityType1As1 = numeric(),
  ProbabilityType5As1 = numeric(),
  ProbabilityType2As2 = numeric(),
  ProbabilityType4As2 = numeric(),
  ProbabilityType2As4 = numeric(),
  ProbabilityType4As4 = numeric(),
  ProbabilityType1As5 = numeric(),
  ProbabilityType5As5 = numeric(),
  UseProcessData = F
)

Arguments

processData

data.table() as returned from this function

DefinitionMethod

'ResourceFile' or 'FunctionParameters', see details.

FileName

path to resource file

StockNameCC

Variable for StockSplittingParameters

StockNameS

Variable for StockSplittingParameters

ProbabilityType1As1

Variable for StockSplittingParameters

ProbabilityType5As1

Variable for StockSplittingParameters

ProbabilityType2As2

Variable for StockSplittingParameters

ProbabilityType4As2

Variable for StockSplittingParameters

ProbabilityType2As4

Variable for StockSplittingParameters

ProbabilityType4As4

Variable for StockSplittingParameters

ProbabilityType1As5

Variable for StockSplittingParameters

ProbabilityType5As5

Variable for StockSplittingParameters

UseProcessData

If TRUE, bypasses execution of function and returns existing 'processData'

Details

For DefinitionMethod 'ResourceFile', definitions are read from a UTF-8 encoded tab separated file with headers and one row with headers corresponding to column names in StockSplittingParameters. see StockSplittingParameters for further explanation on the coding system.

For DefinitionMethod 'FunctionParameters' defintions are constructed from parameters to this function.

See also

PrepareRecaEstimate for use of stock-splitting parameters in Reca-estimation.