Add Survey, Stratum and PSU to PreySpeciesCategoryCatchData — AddPSUToPreySpeciesCategoryCatch • RstoxBase

This function adds biotic PSU definitions (linked to Stratum) and Survey information to PreySpeciesCategoryCatchData.

AddPSUToPreySpeciesCategoryCatch(
  PreySpeciesCategoryCatchData,
  PSUDefinition = c("FunctionParameter", "FunctionInput"),
  PSUDefinitionMethod = c("StationToPSU"),
  BioticPSU = NULL,
  SurveyDefinition = c("FunctionParameter", "FunctionInput"),
  SurveyDefinitionMethod = c("AllStrata", "Table"),
  SurveyTable = data.table::data.table(),
  Survey = NULL,
  StratumPolygon = NULL
)

Arguments

PreySpeciesCategoryCatchData: The PreySpeciesCategoryCatchData data.
PSUDefinition: The method to use for defining the PSUs, one of FunctionParameter to define the PSUs on the fly in this function, or FunctionInput to import PSU process data from a previously run process by BioticPSU.
PSUDefinitionMethod: Character: A string naming the automatic PSU definition method to use. Currently only the option "StationToPSU" is supported, which sets each Station as a PSU. See DefineBioticPSU for details.
BioticPSU: The BioticPSU process data.
SurveyDefinition: The method to use for defining the Survey, one of FunctionParameter to define the Survey on the fly in this function, or FunctionInput to import Survey process data from a previously run process by the input Survey.
SurveyDefinitionMethod: See DefineSurvey
SurveyTable: A table of the two columns Stratum and Survey.
Survey: The Survey process data.
StratumPolygon: The StratumPolygon process data.